Citations in Documentation

  1. Caporaso, J. Gregory, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D. Bushman, Elizabeth K. Costello, Noah Fierer, et al. “QIIME Allows Analysis of High-throughput Community Sequencing Data.” Nature Methods 7, no. 5 (2010): 335–336.
  2. Cole, J. R., B. Chai, R. J. Farris, Q. Wang, A. S. Kulam-Syed-Mohideen, D. M. McGarrell, A. M. Bandela, E. Cardenas, G. M. Garrity, and J. M. Tiedje. “The Ribosomal Database Project (RDP-II): Introducing myRDP Space and Quality Controlled Public Data.” Nucleic Acids Research 35, no. Database (January 3, 2007): D169–D172.

  3. Colwell, Robert K. EstimateS: Statistical Estimation of Species Richness and Shared Species from Samples. Version 8.2. User’s Guide and Application published at: Estimate S Web Site

  4. Frank, Daniel N. “XplorSeq: a Software Environment for Integrated Management and Phylogenetic Analysis of Metagenomic Sequence Data.” BMC Bioinformatics 9 (2008): 420.

  5. Ludwig, Wolfgang, Oliver Strunk, Ralf Westram, Lothar Richter, Harald Meier, Yadhukumar, Arno Buchner, et al. “ARB: a Software Environment for Sequence Data.” Nucleic Acids Research 32, no. 4 (March 15, 2004): 1363–1371.
  6. Magurran, Anne E. Measuring Biological Diversity. John Wiley & Sons, 2009.

  7. Pruesse, Elmar, Christian Quast, Katrin Knittel, Bernhard M. Fuchs, Wolfgang Ludwig, Jörg Peplies, and Frank Oliver Glöckner. “SILVA: a Comprehensive Online Resource for Quality Checked and Aligned Ribosomal RNA Sequence Data Compatible with ARB.” Nucleic Acids Research 35, no. 21 (December 1, 2007): 7188–7196.
  8. R_Development_Core_Team, R: A Language and Environment for Statistical Computing, 2011, R Foundation for Statistical Computing: Vienna, Austria.
  9. SAS, Statistical Analysis System, 2002-2012, SAS Institute Inc: Cary, NC. p. Statistical Analysis System.
  10. Schloss, Patrick D., Sarah L. Westcott, Thomas Ryabin, Justine R. Hall, Martin Hartmann, Emily B. Hollister, Ryan A. Lesniewski, et al. “Introducing Mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities.” Applied and Environmental Microbiology 75, no. 23 (December 2009): 7537–7541.
  11. Wagner, Brandie D., Charles E. Robertson, and J. Kirk Harris. “Application of Two-Part Statistics for Comparison of Sequence Variant Counts.” PLoS ONE 6, no. 5 (May 23, 2011): e20296.

Explicet Documentation