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Explicet Previous Releases . . . 101 matches
...= Explicet Previous Releases = ------- ==== Explicet Version 2.9.4 ==== [[Explicet for 64 bit Windows Systems - v2.9.4|Explicet for 64 bit Windows Systems]] [[Explicet for 32 b...

3.8k - rev: 32 (current) last modified: 2014-07-17 20:43:09

Explicet Tutorial . . . 38 matches
...= Explicet Basic Tutorial = ------- The information below comes from the Explicet tutorial which is automatically installed on your computer by the Windows, Mac, and Linux instal...

32.1k - rev: 49 (current) last modified: 2014-07-09 20:50:35

Explicet Downloads . . . 32 matches
...= Version 2.10.5 Explicet Downloads = ------- == Explicet Software: == {{{#!wiki note '''New Features in Version 2.10.5''' For a list of new features in Explicet version 2.10.5...

3.7k - rev: 132 (current) last modified: 2014-07-21 21:24:04

Explicet . . . 27 matches
...right"}} {{attachment:homepagescreenshot.JPG|alt text|align="right"}} <<Color2("~+'''Explicet published in Bioinformatics!'''+~ ~-To view the publication, click here: [[http://bio...

4.2k - rev: 116 (current) last modified: 2014-07-21 21:07:53

Why Use Explicet? . . . 7 matches
...= Why Use Explicet? = ------- By their very nature, microbiome datasets have many sub-components; often they contain data derived from many samples, with many sequences comprisin...

2.3k - rev: 17 (current) last modified: 2014-07-15 16:10:13

Explicet Documentation . . . 7 matches
...= Explicet Documentation = ------- The information below comes from the Explicet handbook which is automatically installed on your computer by the Windows, Mac, and Linux install...

1.0k - rev: 95 (current) last modified: 2013-08-28 20:40:06

Data Management Capabilities in Explicet . . . 5 matches
...= Data Management Capabilities in Explicet = ------- The fundamental data item in Explicet is the “project”, the data for which are stored in a single file. Optionally, a projec...

0.8k - rev: 14 (current) last modified: 2014-07-15 16:20:02

FAQ . . . 59 matches
...= Frequently Asked Questions = ------- [[#How2CiteAnchor|1. How do I cite Explicet in my publications?]] [[#SourceAnchor|2. How do I get the source for Explicet per the GPLv3 li...

8.7k - rev: 85 (current) last modified: 2014-07-21 19:49:37

Linux Installation . . . 17 matches
...= Linux Installation = ------- Explicet for Linux is supplied as an executable which is statically linked with the Qt and Qwt libraries required. The executable has been tested ...

1.2k - rev: 21 (current) last modified: 2013-06-27 00:11:33

Synopsis . . . 15 matches
...= Synopsis = ------- Explicet is a visualization software application that facilitates analysis of taxonomy-based microbiome datasets. The goal of the Explicet development proces...

2.5k - rev: 24 (current) last modified: 2014-07-15 16:05:26

Getting Started . . . 13 matches
...= Getting Started with Explicet = ------- The fastest way to get started with Explicet is to: 1.#1 Download the correct installer for your computer from the [[Explicet Downloa...

0.9k - rev: 23 (current) last modified: 2013-06-27 15:48:27

Select Data . . . 11 matches
...ected .Type over the existing filter name in the dialog box == B. Group Data == .Explicet allows the data making up multiple libraries to be combined by averaging the relative...

15.2k - rev: 40 (current) last modified: 2014-07-15 20:28:39

Moving Data to and from Other Toolsets: Qiime, R . . . 11 matches
...Data to and from Other Toolsets: Qiime, R = ------- == A. Moving Data from Qiime to Explicet == .Explicet can import data from Qiime via Qiime’s "classic" OTU table format. Mor...

3.8k - rev: 16 (current) last modified: 2014-07-15 17:45:25

Projects . . . 10 matches
...orner of the main window. Users may choose to use the data management capabilities of Explicet, which are shown in [[Data Management Capabilities in Explicet|Figure 2]]. As shown ...

5.2k - rev: 18 (current) last modified: 2014-07-15 19:55:06

Mac OS X Installation . . . 10 matches
...forms:''' .Mac OS 10.7 (Lion), Mac OS 10.8 (Mt. Lion), Mac OS 10.9 (Mavericks): use Explicet_Mac64 .Mac OS 10.6 (Snow Leopard): use Explicet_Mac32 '''Installation:''' .Downl...

0.9k - rev: 12 (current) last modified: 2014-06-30 17:07:04

Microsoft Windows Installation . . . 9 matches
...on = ------- '''Supported Platforms:''' .Windows Vista, Windows 7, Windows 8: use Explicet_Win64 .Windows XP: use Explicet_Win32 '''Installation:''' .Download the platfor...

1.0k - rev: 27 (current) last modified: 2013-05-14 18:51:47

Figures . . . 9 matches
...'Letter''', '''A1''' or '''Custom'''. When you first change a page size to '''A1''', Explicet switches to millimeter '''Units''', but you can switch back to inches if you so desir...

24.4k - rev: 51 (current) last modified: 2014-07-15 20:58:28

Statistics . . . 8 matches
...versity == .Alpha diversity indices measure the sequence/OTU diversity of individual Explicet libraries. When comparing alpha diversity metrics between libraries with different s...

19.2k - rev: 39 (current) last modified: 2014-07-16 19:56:07

Condensed Quick-Start Example . . . 8 matches
... Quick-Start Example = ------- The following guide presents a few quick examples of Explicet capabilities. For a more thoroughly documented example of the Explicet project proce...

4.6k - rev: 26 (current) last modified: 2014-07-15 16:41:53

Comprehensive User Guide: Projects . . . 8 matches
...orner of the main window. Users may choose to use the data management capabilities of Explicet, which are shown in Figure 2 (page 9). As shown in the figure, projects may contain ...

4.3k - rev: 2 (current) last modified: 2013-05-06 01:31:07

Import OTU Data . . . 6 matches
...= Import OTU Data = ------- The Explicet program provides a GUI for exploring OTU data, but does not generate the OTU data. Rather, taxonomic data for a project can be imported ...

4.8k - rev: 22 (current) last modified: 2014-07-15 17:28:17

Citations . . . 6 matches
...= Citations = ------- == Citing Explicet: == Robertson CE, Harris JK, Wagner BD, Granger D, Browne K, Tatem B, Feazel LM, Park K, Pace NR, and Frank DN. Explicet: Graphical user ...

2.9k - rev: 19 (current) last modified: 2014-07-24 19:11:47

Terminology . . . 5 matches
...atter of which we believe to map onto a phylogenetically coherent group of organisms. Explicet views numerical OTUs as interchangeable with classification OTUs. '''Metadata''': ...

2.1k - rev: 20 (current) last modified: 2014-07-15 16:18:14

Metadata . . . 5 matches
...ndow will open .The upper left pane of the window shows the metadata fields found by Explicet in the metadata file *When '''Libraries not found''' is selected, any libraries fou...

8.8k - rev: 26 (current) last modified: 2014-07-15 19:38:49

Main Window Overview . . . 5 matches
...ndow_overview.PNG|placeholder|width=700 height=875}} <<Color2("'''The main window of Explicet has three parts (from top to bottom):'''",col=blue,bcol=white,font=helvetica)>> .<<...

5.5k - rev: 86 (current) last modified: 2014-07-15 16:25:26

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